miRBase entry: ptr-mir-345

Stem-loop ptr-mir-345


Accession
MI0008630
Description
Pan troglodytes ptr-mir-345 precursor miRNA


Sequence

3126 reads, 42.0 reads per million, 24 experiments
cccaaacccuaggucuGCUGACUCCUAGUCCAGGGCUCgugauggcugguggGCCCUGAACGAGGGGUCUGGAggccuggguuugaauaucgacagc
..(((((((.((((((.(.(((((((.((.((((((((((........)))))))))).)).))))))).).)))))))))))))............

Structure
----------cc       u      G U       A  C          gau 
            caaaccc aggucu C GACUCCU GU CAGGGCUCgu   g
            ||||||| |||||| | ||||||| || ||||||||||    
            guuuggg uccggA G CUGGGGA CA GUCCCGggug   g
cgacagcuauaa       -      G U       G  A          guc 


Annotation confidence High
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Genome context
chr14: 85528620-85528716 [+]

Database links

Mature ptr-miR-345-5p

Accession MIMAT0008111
Description Pan troglodytes ptr-miR-345-5p mature miRNA
Sequence 17 - GCUGACUCCUAGUCCAGGGCUC - 38
Evidence not_experimental

Mature ptr-miR-345-3p

Accession MIMAT0052334
Description Pan troglodytes ptr-miR-345-3p mature miRNA
Sequence 53 - GCCCUGAACGAGGGGUCUGGA - 73
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70