Stem-loop ptr-mir-323

Accession

MI0008615

Description

Pan troglodytes ptr-mir-323 precursor miRNA

Literature search

1 open access papers mention ptr-mir-323
(1 sentences)

Sequence

10070 reads, 72.0 reads per million, 24 experiments

ugguacuuggagagAGGUGGUCCGUGGCGCGUUCGcuuuauuuauggcgCACAUUACACGGUCGACCUCUUugcaguaucuaauc
.((((((.(.((((((((.(.(((((..(.((.((((........)))).)).)..))))).).)))))))).))))))).....

Structure

----u      u g        G U     GC C  U    uua 
     gguacu g agagAGGU G CCGUG  G GU CGcu   u
     |||||| | |||||||| | |||||  | || ||||    
     cuauga c uUUCUCCA C GGCAC  U CA gcgg   u
cuaau      - g        G U     AU A  C    uau 

Annotation confidence High

Genome context

chr14: 86274233-86274317 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from ptr-mir-323

Mature ptr-miR-323-5p

• Accession: MIMAT0052323
• Description: Pan troglodytes ptr-miR-323-5p mature miRNA
• Sequence: 15 - AGGUGGUCCGUGGCGCGUUCG - 35
• Evidence: not_experimental

Mature ptr-miR-323-3p

• Accession: MIMAT0008097
• Description: Pan troglodytes ptr-miR-323-3p mature miRNA
• Sequence: 50 - CACAUUACACGGUCGACCUCUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70