Stem-loop ptr-mir-30e

Accession

MI0008606

Description

Pan troglodytes ptr-mir-30e precursor miRNA

Literature search

2 open access papers mention ptr-mir-30e
(3 sentences)

Sequence

53545 reads, 496.0 reads per million, 24 experiments

ggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGCUguaagguguucagaggagCUUUCAGUCGGAUGUUUACAGCggcaggcugcca
((((((((..(((.((((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))).))))))))))).

Structure

-        uu   a            UU           g aag u 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGCU u   g g
 ||||||||  ||| ||||||||||||  ||||||||||| |   |  
 ccgucgga  cgg GACAUUUGUAGG  CUGACUUUCga g   c u
a        --   C            --           g aga u 

Annotation confidence High

Genome context

chr1: 40185260-40185350 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-30e

Mature ptr-miR-30e-5p

• Accession: MIMAT0008092
• Description: Pan troglodytes ptr-miR-30e-5p mature miRNA
• Sequence: 16 - UGUAAACAUCCUUGACUGGAAGCU - 39
• Evidence: not_experimental

Mature ptr-miR-30e-3p

• Accession: MIMAT0052322
• Description: Pan troglodytes ptr-miR-30e-3p mature miRNA
• Sequence: 58 - CUUUCAGUCGGAUGUUUACAGC - 79
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70