Stem-loop ptr-mir-301a

Accession

MI0008597

Description

Pan troglodytes ptr-mir-301a precursor miRNA

Literature search

2 open access papers mention ptr-mir-301a
(2 sentences)

Sequence

587 reads, 6.0 reads per million, 24 experiments

acugcuaacgaauGCUCUGACUUUAUUGCACUACUguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCAUcugaaagcag
.(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..)))))

Structure

a     aa  a     C    ---U          A  -  acu 
 cugcu  cg auGCU UGAC    UUAUUGCACU CU gu   u
 |||||  || ||||| ||||    |||||||||| || ||    
 gacga  gu UACGA ACUG    GAUAACGUGA ga cg   u
-     aa  c     A    UUAU          C  u  aca 

Annotation confidence High

Genome context

chr17: 58454719-58454803 [-]

Mature ptr-miR-301a-5p

• Accession: MIMAT0052321
• Description: Pan troglodytes ptr-miR-301a-5p mature miRNA
• Sequence: 14 - GCUCUGACUUUAUUGCACUACU - 35
• Evidence: not_experimental

Mature ptr-miR-301a-3p

• Accession: MIMAT0008084
• Description: Pan troglodytes ptr-miR-301a-3p mature miRNA
• Sequence: 51 - CAGUGCAAUAGUAUUGUCAAAGCAU - 75
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70