Stem-loop ptr-mir-296

Accession

MI0008592

Description

Pan troglodytes ptr-mir-296 precursor miRNA

Literature search

3 open access papers mention ptr-mir-296
(6 sentences)

Sequence

337 reads, 11.0 reads per million, 24 experiments

aggacccuuccggAGGGCCCCCCCUCAAUCCUGUUgugccuaauucagAGGGUUGGGUGGAGGCUCUCCugaagggcuc
.((.((((((.((((((((.((.(((((((((.(((.........)))))))))))).)).)))))))).)))))))).

Structure

a  a      c        C  C         G   ugc 
 gg cccuuc ggAGGGCC CC CUCAAUCCU UUg   c
 || |||||| |||||||| || ||||||||| |||   u
 uc gggaag CCUCUCGG GG GGGUUGGGA gac   a
c  -      u        A  U         -   uua 

Annotation confidence High

Genome context

chr20: 60836580-60836658 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-296

Mature ptr-miR-296-5p

• Accession: MIMAT0052319
• Description: Pan troglodytes ptr-miR-296-5p mature miRNA
• Sequence: 14 - AGGGCCCCCCCUCAAUCCUGUU - 35
• Evidence: not_experimental

Mature ptr-miR-296-3p

• Accession: MIMAT0008079
• Description: Pan troglodytes ptr-miR-296-3p mature miRNA
• Sequence: 49 - AGGGUUGGGUGGAGGCUCUCC - 69
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70