Stem-loop ptr-mir-210

Accession

MI0008580

Description

Pan troglodytes ptr-mir-210 precursor miRNA

Literature search

9 open access papers mention ptr-mir-210
(27 sentences)

Sequence

3219 reads, 34.0 reads per million, 24 experiments

acccggcagucccuccaggcgcagggcAGCCCCUGCCCACCGCACACUgcgcugccccagacccaCUGUGCGUGUGACAGCGGCUGAUCugugccugggcagcgcgacc
...((((.((....((((((((((..(((((.(((..(((((((((.((.((((...))).).)).)))))).))).))).)))))..)))))))))))).)).))...

Structure

acc  -  a  cccu          gg     C   CC   -      C  c -   c 
   cg gc gu    ccaggcgcag  cAGCC CUG  CAC CGCACA Ug g cug  
   || || ||    ||||||||||  ||||| |||  ||| |||||| || | ||| c
   gc cg cg    gguccguguC  GUCGG GAC  GUG GCGUGU ac c gac  
cca  g  a  ----          UA     C   -A   U      C  c a   c 

Annotation confidence High

Genome context

chr11: 492995-493103 [-]

Mature ptr-miR-210-5p

• Accession: MIMAT0052316
• Description: Pan troglodytes ptr-miR-210-5p mature miRNA
• Sequence: 28 - AGCCCCUGCCCACCGCACACU - 48
• Evidence: not_experimental

Mature ptr-miR-210-3p

• Accession: MIMAT0008070
• Description: Pan troglodytes ptr-miR-210-3p mature miRNA
• Sequence: 66 - CUGUGCGUGUGACAGCGGCUGAUC - 89
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70