miRBase entry: ptr-mir-202

Stem-loop ptr-mir-202


Accession
MI0008574
Description
Pan troglodytes ptr-mir-202 precursor miRNA


Sequence

74323 reads, 4956.0 reads per million, 22 experiments
cuccucagagccgcccgccguuccuuuUUCCUAUGCAUAUACUUCUUUgaggaucuggccuaaAGAGGUAUAGGGCAUGGGAAAacggggcggucggguccuccccagc
.......(((..((((((((((((.(((((((((((.(((((((((((.(((......))))))))))))))..))))))))))).))))))).))))).)))......

Structure
cuccuca   cc     -       u           -A           g   au 
       gag  gcccg ccguucc uuUUCCUAUGC  UAUACUUCUUU agg  c
       |||  ||||| ||||||| |||||||||||  ||||||||||| |||   
       cuc  ugggc ggcgggg aAAAGGGUACG  AUAUGGAGAaa ucc  u
-cgaccc   -c     u       c           GG           -   gg 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr10: 135422705-135422813 [-]

Database links

Mature ptr-miR-202-5p

Accession MIMAT0052312
Description Pan troglodytes ptr-miR-202-5p mature miRNA
Sequence 28 - UUCCUAUGCAUAUACUUCUUU - 48
Evidence not_experimental

Mature ptr-miR-202-3p

Accession MIMAT0008064
Description Pan troglodytes ptr-miR-202-3p mature miRNA
Sequence 64 - AGAGGUAUAGGGCAUGGGAAA - 84
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70