Stem-loop ptr-mir-199a-1

Accession

MI0008571

Description

Pan troglodytes ptr-mir-199a-1 precursor miRNA

Literature search

2 open access papers mention ptr-mir-199a-1
(5 sentences)

Sequence

791836 reads, 9198.0 reads per million, 24 experiments

gccaaCCCAGUGUUCAGACUACCUGUUcaggaggcucucaauguguACAGUAGUCUGCACAUUGGUUagg
.((...(((((((.((((((((.(((.((.(((...)))..))...))))))))))).)))))))...))

Structure

g  aaC       U        C   --U  -g   g 
 cc   CCAGUGU CAGACUAC UGU   ca  gag  
 ||   ||||||| |||||||| |||   ||  ||| c
 gg   GGUUACA GUCUGAUG ACA   gu  cuc  
-  aUU       C        -   ugu  aa   u 

Annotation confidence High

Genome context

chr19: 11396978-11397047 [-]

Mature ptr-miR-199a-5p

• Accession: MIMAT0002530
• Description: Pan troglodytes ptr-miR-199a-5p mature miRNA
• Sequence: 6 - CCCAGUGUUCAGACUACCUGUU - 27
• Evidence: not_experimental

Mature ptr-miR-199a-3p

• Accession: MIMAT0009192
• Description: Pan troglodytes ptr-miR-199a-3p mature miRNA
• Sequence: 47 - ACAGUAGUCUGCACAUUGGUU - 67
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70