Stem-loop ptr-mir-185

Accession

MI0008561

Description

Pan troglodytes ptr-mir-185 precursor miRNA

Literature search

1 open access papers mention ptr-mir-185
(9 sentences)

Sequence

149083 reads, 1182.0 reads per million, 24 experiments

gggggcgagggauUGGAGAGAAAGGCAGUUCCUGAUgguccccuccccAGGGGCUGGCUUUCCUCUGGUccuucccuccca
(((((.((((((((((((.(((((.(((((((((..((......)).))))))))).))))))))))))))))).))))).

Structure

-     c            A     G         AU  uc 
 ggggg gagggauUGGAG GAAAG CAGUUCCUG  gg  c
 ||||| |||||||||||| ||||| |||||||||  ||   
 cccuc cuuccUGGUCUC CUUUC GUCGGGGAc  cc  c
a     c            -     G         -c  uc 

Annotation confidence High

Genome context

chr22: 6597748-6597828 [+]

Mature ptr-miR-185-5p

• Accession: MIMAT0008053
• Description: Pan troglodytes ptr-miR-185-5p mature miRNA
• Sequence: 14 - UGGAGAGAAAGGCAGUUCCUGAU - 36
• Evidence: not_experimental

Mature ptr-miR-185-3p

• Accession: MIMAT0052305
• Description: Pan troglodytes ptr-miR-185-3p mature miRNA
• Sequence: 49 - AGGGGCUGGCUUUCCUCUGGU - 69
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70