Stem-loop ptr-mir-133b

Accession

MI0008534

Description

Pan troglodytes ptr-mir-133b precursor miRNA

Literature search

4 open access papers mention ptr-mir-133b
(4 sentences)

Sequence

3764 reads, 36.0 reads per million, 17 experiments

cucagaagaaagaugcccccugcucugGCUGGUCAAACGGAACCAAGUCcgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAcagcagggcuggcaaugcccaguccuuggaga
.............(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..))))....(((.....)))...

Structure

-----cucagaagaaaga    --       c        CA  C  A      U  g    c 
                  ugcc  cccugcu ugGCUGGU  AA GG ACCAAG Cc ucuu  
                  ||||  ||||||| ||||||||  || || |||||| || |||| c
                  acgg  gggacga AUCGACCA  UU CC UGGUUU gg agag  
agagguuccugacccgua    uc       c        AC  C  C      -  -    u 

Annotation confidence High

Genome context

chr6: 52748412-52748529 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-133b

Mature ptr-miR-133b-5p

• Accession: MIMAT0061152
• Description: Pan troglodytes ptr-miR-133b-5p mature miRNA
• Sequence: 28 - GCUGGUCAAACGGAACCAAGUC - 49
• Evidence: experimental ; Illumina [1]

Mature ptr-miR-133b-3p

• Accession: MIMAT0008030
• Description: Pan troglodytes ptr-miR-133b-3p mature miRNA
• Sequence: 65 - UUUGGUCCCCUUCAACCAGCUA - 86
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70