Stem-loop ptr-mir-1306

Accession

MI0008525

Description

Pan troglodytes ptr-mir-1306 precursor miRNA

Literature search

1 open access papers mention ptr-mir-1306
(2 sentences)

Sequence

796 reads, 10.0 reads per million, 24 experiments

ugagcagucuccaCCACCUCCCCUGCAAACGUCCAguggugcagagguaauggACGUUGGCUCUGGUGGUGAUGgacaguccga
((.((.((((.(((((((......((.((((((((.((.(.....).)).)))))))).))...)))))))..)))).)).)).

Structure

-  a  a    -c       UCCCCU  A        g  g g 
 ug gc gucu  caCCACC      GC AACGUCCA ug u c
 || || ||||  |||||||      || |||||||| || | a
 gc ug cagG  GUGGUGG      CG UUGCAggu au g g
a  c  a    UA       ---UCU  G        a  g a 

Annotation confidence Medium

Genome context

chr22: 6676461-6676544 [+]

Mature ptr-miR-1306-5p

• Accession: MIMAT0052287
• Description: Pan troglodytes ptr-miR-1306-5p mature miRNA
• Sequence: 14 - CCACCUCCCCUGCAAACGUCCA - 35
• Evidence: not_experimental

Mature ptr-miR-1306-3p

• Accession: MIMAT0008023
• Description: Pan troglodytes ptr-miR-1306-3p mature miRNA
• Sequence: 54 - ACGUUGGCUCUGGUGGUGAUG - 74
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70