Stem-loop ptr-mir-128b

Accession

MI0008482

Description

Pan troglodytes ptr-mir-128b precursor miRNA

Sequence

175704 reads, 1283.0 reads per million, 24 experiments

gugcagugggaagGGGGGCCGAUACACUGUACGAGAgugaguagcaggucUCACAGUGAACCGGUCUCUUUcccuacuguguc
..((((((((.((((((((((...((((((..((((.(........).))))))))))...)))))))))).))))))))...

Structure

-gu        a          AUA      AC    g gag 
   gcaguggg agGGGGGCCG   CACUGU  GAGA u   u
   |||||||| ||||||||||   ||||||  |||| |    
   ugucaucc UUUCUCUGGC   GUGACA  CUcu g   a
cug        c          CAA      --    g acg 

Annotation confidence High

Genome context

chr3: 36484012-36484094 [+]

Mature ptr-miR-128b-5p

• Accession: MIMAT0052192
• Description: Pan troglodytes ptr-miR-128b-5p mature miRNA
• Sequence: 14 - GGGGGCCGAUACACUGUACGAGA - 36
• Evidence: not_experimental

Mature ptr-miR-128b-3p

• Accession: MIMAT0060757
• Description: Pan troglodytes ptr-miR-128b-3p mature miRNA
• Sequence: 51 - UCACAGUGAACCGGUCUCUUU - 71
• Evidence: experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70