Stem-loop ptr-mir-1247

Accession

MI0008453

Description

Pan troglodytes ptr-mir-1247 precursor miRNA

Sequence

95 reads, 3.0 reads per million, 19 experiments

ccgcuugccucgcccagcgcagccccggccgcugggcgcACCCGUCCCGUUCGUCCCCGGAcguugcucucuacccCGGGAACGUCGAGACUGGAGcgcccgaacugagccaccuucgcggaccccgagagcggc
(((((...((((.((.(((.((....(((((.(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).)))))))...)).)))..)).)))))....))))))))).

Structure

-     ugc    ---c  a   c  cccc   -  --c       A  C   C  UU   C     Ac  ugc 
 ccgcu   cucg    cc gcg ag    ggc cg   ugggcgc CC GUC CG  CGU CCCGG  gu   u
 |||||   ||||    || ||| ||    ||| ||   ||||||| || ||| ||  ||| |||||  ||    
 ggcga   gagc    gg cgc uc    ccg gu   gcccgcG GG CAG GC  GCA GGGCc  ca   c
c     ---    ccca  -   u  --ca   a  caa       A  U   A  -U   A     -c  ucu 

Annotation confidence High

Genome context

chr14: 86818833-86818967 [-]

Mature ptr-miR-1247-5p

• Accession: MIMAT0007973
• Description: Pan troglodytes ptr-miR-1247-5p mature miRNA
• Sequence: 40 - ACCCGUCCCGUUCGUCCCCGGA - 61
• Evidence: not_experimental

Mature ptr-miR-1247-3p

• Accession: MIMAT0052277
• Description: Pan troglodytes ptr-miR-1247-3p mature miRNA
• Sequence: 77 - CGGGAACGUCGAGACUGGAG - 96
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70