Stem-loop ptr-mir-122

Accession

MI0008431

Description

Pan troglodytes ptr-mir-122 precursor miRNA

Literature search

41 open access papers mention ptr-mir-122
(589 sentences)

Sequence

23401953 reads, 161514.0 reads per million, 24 experiments

cuuagcagagcugUGGAGUGUGACAAUGGUGUUUGUgucuaaauuaucaAACGCCAUUAUCACACUAAAUagcuacugcuaggc
((((((((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).)))))))).

Structure

-        -      GG       C           Ugucu 
 cuuagcag agcugU  AGUGUGA AAUGGUGUUUG     a
 |||||||| ||||||  ||||||| |||||||||||      
 ggaucguc ucgaUA  UCACACU UUACCGCAAac     a
c        a      AA       A           uauua 

Annotation confidence High

Genome context

chr18: 55851820-55851903 [+]

Mature ptr-miR-122-5p

• Accession: MIMAT0007963
• Description: Pan troglodytes ptr-miR-122-5p mature miRNA
• Sequence: 14 - UGGAGUGUGACAAUGGUGUUUGU - 36
• Evidence: not_experimental

Mature ptr-miR-122-3p

• Accession: MIMAT0052276
• Description: Pan troglodytes ptr-miR-122-3p mature miRNA
• Sequence: 50 - AACGCCAUUAUCACACUAAAU - 70
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70