Stem-loop ptr-mir-1-1

Accession

MI0008412

Description

Pan troglodytes ptr-mir-1-1 precursor miRNA

Sequence

15241239 reads, 103251.0 reads per million, 24 experiments

gggaaACAUACUUCUUUAUAUGCCCAUAUggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAUcuca
((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))).

Structure

-    a                GC     ---   a 
 ggga ACAUACUUCUUUAUAU  CCAUA   Ugg c
 |||| ||||||||||||||||  |||||   ||| c
 cucU UGUAUGAAGAAAUGUA  GGUau   auc u
a    A                -A     cga   g 

Annotation confidence High

Genome context

chr20: 64662320-64662389 [+]

Mature ptr-miR-1-1-5p

• Accession: MIMAT0052272
• Description: Pan troglodytes ptr-miR-1-1-5p mature miRNA
• Sequence: 6 - ACAUACUUCUUUAUAUGCCCAUAU - 29
• Evidence: not_experimental

Mature ptr-miR-1-1-3p

• Accession: MIMAT0060778
• Description: Pan troglodytes ptr-miR-1-1-3p mature miRNA
• Sequence: 45 - UGGAAUGUAAAGAAGUAUGUAU - 66
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70