Stem-loop ptr-mir-10a

Accession

MI0008410

Description

Pan troglodytes ptr-mir-10a precursor miRNA

Literature search

2 open access papers mention ptr-mir-10a
(2 sentences)

Sequence

146548 reads, 1144.0 reads per million, 24 experiments

aucugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUguaaggaauuuuguggucaCAAAUUCGUAUCUAGGGGAAUauguaguugacauaaacacuccgcucu
...(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...))).........

Structure

------auc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUg       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguaUA GGGG AUCUA GCUUAAACac       u
ucucgccuc   aau    uu        A    -     U          ugguguu 

Annotation confidence High

Genome context

chr17: 9252039-9252147 [+]

Mature ptr-miR-10a-5p

• Accession: MIMAT0007944
• Description: Pan troglodytes ptr-miR-10a-5p mature miRNA
• Sequence: 21 - UACCCUGUAGAUCCGAAUUUGU - 42
• Evidence: not_experimental

Mature ptr-miR-10a-3p

• Accession: MIMAT0052270
• Description: Pan troglodytes ptr-miR-10a-3p mature miRNA
• Sequence: 62 - CAAAUUCGUAUCUAGGGGAAU - 82
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70