Stem-loop ptr-let-7i

Accession

MI0008407

Description

Pan troglodytes ptr-let-7i precursor miRNA

Literature search

8 open access papers mention ptr-let-7i
(15 sentences)

Sequence

802222 reads, 6650.0 reads per million, 24 experiments

cuggcUGAGGUAGUAGUUUGUGCUGUUggucggguugugacauugcccgcuguggagauaaCUGCGCAAGCUACUGCCUUGCU
..(((.(((((((((((((((((.(((((.(((((.........)))))))........))).))))))))))))))))))))

Structure

cu   U                 U   --------  u     ugu 
  ggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
  ||| ||||||||||||||||| |||        || |||||   a
  UCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
--   -                 U   uagaggug  -     uua 

Annotation confidence High

Genome context

chr12: 27094725-27094807 [-]

Mature ptr-let-7i-5p

• Accession: MIMAT0007943
• Description: Pan troglodytes ptr-let-7i-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGUUUGUGCUGUU - 27
• Evidence: not_experimental

Mature ptr-let-7i-3p

• Accession: MIMAT0052269
• Description: Pan troglodytes ptr-let-7i-3p mature miRNA
• Sequence: 62 - CUGCGCAAGCUACUGCCUUGCU - 83
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70