Stem-loop sly-MIR171a

Accession

MI0008365

Description

Solanum lycopersicum sly-MIR171a precursor miRNA

Literature search

24 open access papers mention sly-MIR171a
(148 sentences)

Sequence

478928 reads, 6856.0 reads per million, 82 experiments

ugaaacaguaacuuugaUAUUGGCCUGGUUCACUCAGAcaacaaaauguaaacuauauuugaaugguugaguuuucguuuuucguuUGAUUGAGCCGUGCCAAUAUCucaguuucucuuuca
(((((.((.((((..(((((((((.(((((((.((((((...((((((.(((((..(((.....)))..))))).))))))..)))))).))))))).)))))))))..)))).)).)))))

Structure

     c  u    uu         C       C      aac      u     au   u 
ugaaa ag aacu  gaUAUUGGC UGGUUCA UCAGAc   aaaaug aaacu  auu g
||||| || ||||  ||||||||| ||||||| ||||||   |||||| |||||  ||| a
acuuu uc uuga  CUAUAACCG GCCGAGU AGUuug   uuuugc uuuga  ugg a
     c  u    cu         U       U      -cu      u     gu   u 

Annotation confidence High

Genome context

chr2: 46752782-46752903 [-]

Mature sly-miR171a-5p

• Accession: MIMAT0055716
• Description: Solanum lycopersicum sly-miR171a-5p mature miRNA
• Sequence: 18 - UAUUGGCCUGGUUCACUCAGA - 38
• Evidence: experimental ; unknown

Mature sly-miR171a-3p

• Accession: MIMAT0007922
• Description: Solanum lycopersicum sly-miR171a-3p mature miRNA
• Sequence: 87 - UGAUUGAGCCGUGCCAAUAUC - 107
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7