Stem-loop ssc-mir-30b

Accession

MI0008215

Description

Sus scrofa ssc-mir-30b precursor miRNA

Literature search

20 open access papers mention ssc-mir-30b
(38 sentences)

Sequence

147 reads, 52 reads per million, 10 experiments

uuucaguucgUGUAAACAUCCUACACUCAGCUguaauacauggauuggCUGGGAGGUGGAUGUUUACUUcagcuga
..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...))))))

Structure

uu      cgU          U  -A        uaaua 
  ucaguu   GUAAACAUCC AC  CUCAGCUg     c
  ||||||   |||||||||| ||  ||||||||      
  agucga   CAUUUGUAGG UG  GGGUCggu     a
--      cUU          -  GA        uaggu 

Annotation confidence Low

Genome context

chr4: 6717643-6717718 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-30b

Mature ssc-miR-30b-5p

• Accession: MIMAT0007756
• Description: Sus scrofa ssc-miR-30b-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUACACUCAGCU - 32
• Evidence: experimental ; cloned [1,4], 454 [2], Illumina [3,5-6]

Mature ssc-miR-30b-3p

• Accession: MIMAT0015269
• Description: Sus scrofa ssc-miR-30b-3p mature miRNA
• Sequence: 49 - CUGGGAGGUGGAUGUUUACUU - 69
• Evidence: experimental ; Illumina [3,5-6]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


4. PubMed ID: 18548309
   Identification and characterization of new microRNAs from pig
   "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
   "Mamm Genome (2008) 19:570-580


5. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


6. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100