miRBase entry: ssc-mir-16-1

Stem-loop ssc-mir-16-1

Sus scrofa ssc-mir-16-1 precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
22 open access papers mention ssc-mir-16-1
(47 sentences)


625 reads, 291 reads per million, 11 experiments

uc    cU         UA        C  --    aa 
  cgcu  AGCAGCACG  AAUAUUGG Gu  agua  a
  ||||  |||||||||  |||||||| ||  ||||  u
  gcga  ucgucgugu  uuauaacc ca  uuau  a
gu    uu         ua        a  aa    aa 

Annotation confidence Not enough data
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Genome context
chr13: 108388290-108388366 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-16-1
Name Accession Chromosome Start End Strand Confidence

Database links

Mature ssc-miR-16

Accession MIMAT0007754
Description Sus scrofa ssc-miR-16 mature miRNA
Evidence experimental
cloned [1,3], Illumina [2,4-5]


  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100