Stem-loop ssc-mir-15a

Accession

MI0008211

Description

Sus scrofa ssc-mir-15a precursor miRNA

Literature search

20 open access papers mention ssc-mir-15a
(93 sentences)

Sequence

97 reads, 31 reads per million, 11 experiments

uuggaguaaagUAGCAGCACAUAAUGGUUUGUggauuuugaaaaggugcaggccauauugugcugccucaaaaauacaa
..........(..((((((((..((((((((((.............))))))))))..))))))))..)..........

Structure

uuggaguaaa UA        UA          gauuu 
          g  GCAGCACA  AUGGUUUGUg     u
          |  ||||||||  ||||||||||     g
          c  cgucgugu  uaccggacgu     a
aacauaaaaa uc        ua          ggaaa 

Annotation confidence Not enough data

Genome context

chrUScaf2048: 70414-70492 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-15a

Mature ssc-miR-15a

• Accession: MIMAT0007753
• Description: Sus scrofa ssc-miR-15a mature miRNA
• Sequence: 12 - UAGCAGCACAUAAUGGUUUGU - 32
• Evidence: experimental ; cloned [1,3], Illumina [2,4-5]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 18548309
   Identification and characterization of new microRNAs from pig
   "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
   "Mamm Genome (2008) 19:570-580


4. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


5. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100