Stem-loop gga-mir-124a-2

Accession

MI0008210

Description

Gallus gallus gga-mir-124a-2 precursor miRNA

Literature search

12 open access papers mention gga-mir-124a-2
(36 sentences)

Sequence

129590 reads, 1347 reads per million, 5 experiments

ccgagccucucucugcguGUUCACAGCGGACCUUGAUuuaauguccauacaaUUAAGGCACGCGGUGAAUGCCAagagaggagccucacagcuucauu
..((((((((((.((.((((((((.(((..((((((((............))))))))..))).)))))))))))))))))...)))...........

Structure

---------cc   ---       c  c        A   GA        uaaug 
           gag   ccucucu ug guGUUCAC GCG  CCUUGAUu     u
           |||   ||||||| || |||||||| |||  ||||||||      
           cuc   ggagaga AC CGUAAGUG CGC  GGAAUUaa     c
uuacuucgaca   cga       -  -        G   AC        cauac 

Annotation confidence High

Genome context

chr20: 8883886-8883983 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-124a-2

Mature gga-miR-124a-3p

• Accession: MIMAT0001128
• Description: Gallus gallus gga-miR-124a-3p mature miRNA
• Sequence: 53 - UUAAGGCACGCGGUGAAUGCCA - 74
• Evidence: experimental ; Illumina [2]

Mature gga-miR-124a-5p

• Accession: MIMAT0026511
• Description: Gallus gallus gga-miR-124a-5p mature miRNA
• Sequence: 19 - GUUCACAGCGGACCUUGAU - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45