Stem-loop cfa-mir-338

Accession

MI0008163

Description

Canis lupus familiaris cfa-mir-338 precursor miRNA

Literature search

7 open access papers mention cfa-mir-338
(10 sentences)

Sequence

344923 reads, 1169.0 reads per million, 79 experiments

AACAAUAUCCUGGUGCUGAGUgaugacacaugcaacUCCAGCAUCAGUGAUUUUGUUGA
(((((.(((((((((((((((.............))).))))))))).))).)))))..

Structure

--     U   -         -   gauga 
  AACAA AUC CUGGUGCUG AGU     c
  ||||| ||| ||||||||| |||     a
  UUGUU UAG GACUACGAC Uca     c
AG     U   U         C   acgua 

Annotation confidence High

Genome context

9: 1524238-1524296 [+]

Mature cfa-miR-338-5p

• Accession: MIMAT0051859
• Description: Canis lupus familiaris cfa-miR-338-5p mature miRNA
• Sequence: 1 - AACAAUAUCCUGGUGCUGAGU - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-338-3p

• Accession: MIMAT0006739
• Description: Canis lupus familiaris cfa-miR-338-3p mature miRNA
• Sequence: 37 - UCCAGCAUCAGUGAUUUUGUUGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415