Stem-loop cfa-mir-433

Accession

MI0008131

Description

Canis lupus familiaris cfa-mir-433 precursor miRNA

Literature search

4 open access papers mention cfa-mir-433
(10 sentences)

Sequence

51767 reads, 149.0 reads per million, 70 experiments

UACGGUGAGCCUGUCAUUAUUCagagaggcuagauccucuguguugagaaggAUCAUGAUGGGCUCCUCGGUGU
..(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).)))....

Structure

--UA   U           U   --------  g     cu 
    CGG GAGCCUGUCAU AUU        Ca agagg  a
    ||| ||||||||||| |||        || |||||   
    GCU CUCGGGUAGUA UAg        gu ucucc  g
UGUG   C           C   gaagaguu  g     ua 

Annotation confidence High

Genome context

8: 69387328-69387401 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-433

Mature cfa-miR-433-5p

• Accession: MIMAT0051832
• Description: Canis lupus familiaris cfa-miR-433-5p mature miRNA
• Sequence: 1 - UACGGUGAGCCUGUCAUUAUUC - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-433-3p

• Accession: MIMAT0006712
• Description: Canis lupus familiaris cfa-miR-433-3p mature miRNA
• Sequence: 53 - AUCAUGAUGGGCUCCUCGGUGU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415