Stem-loop cfa-let-7c

Accession

MI0008076

Description

Canis lupus familiaris cfa-let-7c precursor miRNA

Literature search

16 open access papers mention cfa-let-7c
(24 sentences)

Sequence

4726871 reads, 5770.0 reads per million, 82 experiments

UGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCC
.(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))...

Structure

--U   G   U             ua  g ua  c 
   GAG UAG AGGUUGUAUGGUU  ga u  ca  
   ||| ||| |||||||||||||  || |  || c
   UUC AUC UCCAACAUGUCaa  uu a  gu  
CCU   G   U             --  g gg  c 

Annotation confidence High

Genome context

31: 13288729-13288795 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-let-7c

Mature cfa-let-7c-5p

• Accession: MIMAT0006669
• Description: Canis lupus familiaris cfa-let-7c-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-let-7c-3p

• Accession: MIMAT0051787
• Description: Canis lupus familiaris cfa-let-7c-3p mature miRNA
• Sequence: 46 - CUGUACAACCUUCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415