Stem-loop cfa-mir-33a

Accession

MI0007988

Description

Canis lupus familiaris cfa-mir-33a precursor miRNA

Literature search

1 open access papers mention cfa-mir-33a
(1 sentences)

Sequence

15139 reads, 29.0 reads per million, 77 experiments

GUGCAUUGUAGUUGCAUUGCAuguucuggcgguacccgugCAAUGUUUCCACAGUGCAUCA
(((((((((.(..((((((((((....((.....))))))))))))..).)))))))))..

Structure

--         A UU          uucu  c 
  GUGCAUUGU G  GCAUUGCAug    gg g
  ||||||||| |  ||||||||||    || g
  UACGUGACA C  UGUAACgugc    cc u
AC         C UU          ----  a 

Annotation confidence High

Genome context

10: 24201614-24201674 [-]

Mature cfa-miR-33a-5p

• Accession: MIMAT0006593
• Description: Canis lupus familiaris cfa-miR-33a-5p mature miRNA
• Sequence: 1 - GUGCAUUGUAGUUGCAUUGCA - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-33a-3p

• Accession: MIMAT0051700
• Description: Canis lupus familiaris cfa-miR-33a-3p mature miRNA
• Sequence: 41 - CAAUGUUUCCACAGUGCAUCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415