Stem-loop gga-mir-193a

Accession

MI0007564

Description

Gallus gallus gga-mir-193a precursor miRNA

Literature search

5 open access papers mention gga-mir-193a
(19 sentences)

Sequence

2403 reads, 32 reads per million, 5 experiments

agcugagggcUGGGUCUUUGCGGGCGAGAUGAgagguucgugucuucAACUGGCCUACAAAGUCCCAGUucucggcu
((((((((((((((.(((((.((((.((.(((((........)).))).)).)))).))))).))))))))))))))

Structure

              U     C    G  A   -  ggu 
agcugagggcUGGG CUUUG GGGC AG UGA ga   u
|||||||||||||| ||||| |||| || ||| ||    
ucggcucuUGACCC GAAAC UCCG UC Acu cu   c
              U     A    G  A   u  gug 

Annotation confidence High

Comments

This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (J_AD0537A21_t807e807.b2).

Genome context

chr18: 6491327-6491403 [+]

Mature gga-miR-193a-3p

• Accession: MIMAT0007740
• Description: Gallus gallus gga-miR-193a-3p mature miRNA
• Sequence: 48 - AACUGGCCUACAAAGUCCCAGU - 69
• Evidence: experimental ; Illumina [1,3], cloned [2], Northern [2]

Mature gga-miR-193a-5p

• Accession: MIMAT0026787
• Description: Gallus gallus gga-miR-193a-5p mature miRNA
• Sequence: 11 - UGGGUCUUUGCGGGCGAGAUGA - 32
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45