Stem-loop gga-mir-15c

Accession

MI0007562

Description

Gallus gallus gga-mir-15c precursor miRNA

Literature search

14 open access papers mention gga-mir-15c
(41 sentences)

Sequence

2245 reads, 34 reads per million, 5 experiments

ugaggagaugUAGCAGCACAUCAUGGUUUGUAgggacaaggagauaCAGACCAUUCUGGGCUGCCUCAuuaccuca
(((((.((((..(((((.((..((((((((((............))))))))))..)).)))))..)))).)))))

Structure

     a    UA     A  UC          gggac 
ugagg gaug  GCAGC CA  AUGGUUUGUA     a
||||| ||||  ||||| ||  ||||||||||      
acucc uuAC  CGUCG GU  UACCAGACau     a
     a    UC     G  CU          agagg 

Annotation confidence Not enough data

Genome context

chr4: 4071811-4071886 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-15c

Mature gga-miR-15c-5p

• Accession: MIMAT0007737
• Description: Gallus gallus gga-miR-15c-5p mature miRNA
• Sequence: 11 - UAGCAGCACAUCAUGGUUUGUA - 32
• Evidence: experimental ; Illumina [1], Northern [2]

Mature gga-miR-15c-3p

• Accession: MIMAT0007738
• Description: Gallus gallus gga-miR-15c-3p mature miRNA
• Sequence: 47 - CAGACCAUUCUGGGCUGCCUCA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964