Stem-loop gga-mir-1687

Accession

MI0007421

Description

Gallus gallus gga-mir-1687 precursor miRNA

Literature search

1 open access papers mention gga-mir-1687
(4 sentences)

Sequence

10 reads, 0 reads per million, 3 experiments

gauuucuuugugucuguggucUGAGGAAAUGAGCCAGCUGAGuuagcaacuucuUUGCUGGCUGUUUCUCAGUGAcugcagcauaaaaauc
(((((..(((((.(((((((((((((((...(((((((.(((..........))).))))))).)))))))..))))))))))))))))))

Structure

     cu     u        --       AUG       U   uuag 
gauuu  uugug cugugguc  UGAGGAA   AGCCAGC GAG    c
|||||  ||||| ||||||||  |||||||   ||||||| |||     
cuaaa  aauac gacgucAG  ACUCUUU   UCGGUCG Uuc    a
     --     -        UG       --G       U   uuca 

Annotation confidence Not enough data

Genome context

chr20: 13296363-13296453 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1687

Mature gga-miR-1687-5p

• Accession: MIMAT0007576
• Description: Gallus gallus gga-miR-1687-5p mature miRNA
• Sequence: 22 - UGAGGAAAUGAGCCAGCUGAG - 42
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1687-3p

• Accession: MIMAT0007577
• Description: Gallus gallus gga-miR-1687-3p mature miRNA
• Sequence: 55 - UUGCUGGCUGUUUCUCAGUGA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964