Stem-loop gga-mir-1684a

Accession

MI0007418

Description

Gallus gallus gga-mir-1684a precursor miRNA mir-1684

Gene
family

RF03880; mir-1684

Literature search

4 open access papers mention gga-mir-1684a
(8 sentences)

Sequence

18827 reads, 10.0 reads per million, 192 experiments

uggaucggguuugaaaggagAGCUCUGCUUCCUCAUACAUACUcaucuuuucuauggaUAAGUAUGAGGAAAUGGAGCUCUccuuccauuccaccuguuuua
((((.(((((.((.(((((((((((((.((((((((((.((.((((.......)))).)).)))))))))).))))))))))))).))....))))).))))

Structure

    u     ---u  a             C          A  C    cu 
ugga cgggu    ug aaggagAGCUCUG UUCCUCAUAC UA Ucau  u
|||| |||||    || ||||||||||||| |||||||||| || ||||  u
auuu gucca    ac uuccUCUCGAGGU AAGGAGUAUG AU ggua  u
    u     ccuu  c             A          A  a    uc 

Annotation confidence High

Genome context

4: 88672198-88672299 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1684a

Mature gga-miR-1684a-5p

• Accession: MIMAT0007571
• Description: Gallus gallus gga-miR-1684a-5p mature miRNA
• Sequence: 21 - AGCUCUGCUUCCUCAUACAUACU - 43
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1684a-3p

• Accession: MIMAT0007572
• Description: Gallus gallus gga-miR-1684a-3p mature miRNA
• Sequence: 59 - UAAGUAUGAGGAAAUGGAGCUCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964