Stem-loop gga-mir-1682

Accession

MI0007416

Description

Gallus gallus gga-mir-1682 precursor miRNA

Literature search

1 open access papers mention gga-mir-1682
(1 sentences)

Sequence

443 reads, 2.0 reads per million, 44 experiments

gggaaaacaaagcccugacaguuggcccacccuaccgaggcugcccgUGGGUCAGAUGGAGCUGAGGGugccc
(((....(..(((((......((((((((((((....)))......)))))))))..)).)))..)....)))

Structure

   aaaa aa   -  ugacag         ------   a 
ggg    c  agc cc      uuggcccac      ccu c
|||    |  ||| ||      |||||||||      |||  
ccc    G  UCG GG      GACUGGGUg      gga c
   guGG AG   A  ----UA         cccguc   g 

Annotation confidence Not enough data

Genome context

14: 4926072-4926144 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1682

Mature gga-miR-1682-3p

• Accession: MIMAT0007569
• Description: Gallus gallus gga-miR-1682-3p mature miRNA
• Sequence: 48 - UGGGUCAGAUGGAGCUGAGGG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964