Stem-loop gga-mir-1653

Accession

MI0007385

Description

Gallus gallus gga-mir-1653 precursor miRNA

Literature search

1 open access papers mention gga-mir-1653
(1 sentences)

Sequence

660 reads, 1.0 reads per million, 125 experiments

ucaggaccgcucuguucccauUUGUAUGCCCAGCACUGGUCCUGgugucugcuaugguuuccaCAGGAGCUGUGCUGCAUGCAGGuguggaugcagcaucuugg
.(((((..(((....((((((((((((((..(((((.(.(((((.((...((....))...))))))).).)))))))))))))))).)))...))).))))).

Structure

u     cc   cugu   -           CC     U G     g  ucu  u 
 cagga  gcu    ucc cauUUGUAUGC  AGCAC G UCCUG ug   gc a
 |||||  |||    ||| |||||||||||  ||||| | ||||| ||   ||  
 guucu  cga    agg guGGACGUACG  UCGUG C AGGAC ac   ug u
g     -a   -cgu   u           --     U G     -  cuu  g 

Annotation confidence High

Genome context

9: 14033061-14033164 [-]

Mature gga-miR-1653-5p

• Accession: MIMAT0051243
• Description: Gallus gallus gga-miR-1653-5p mature miRNA
• Sequence: 22 - UUGUAUGCCCAGCACUGGUCCUG - 44
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1653-3p

• Accession: MIMAT0007532
• Description: Gallus gallus gga-miR-1653-3p mature miRNA
• Sequence: 64 - CAGGAGCUGUGCUGCAUGCAGG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964