Stem-loop gga-mir-1621

Accession

MI0007350

Description

Gallus gallus gga-mir-1621 precursor miRNA

Sequence

5 reads, 0 reads per million, 2 experiments

uucggcaACCGGCUGCCUCGGUGGCACcgucucccgcucggaacGGUUCGCCGUGCCGCCGCGCacccgag
.((((...(((((.((..((((((.(((((.(((.....)))))))))))))).)).)))).)...)))).

Structure

u    caA -    U  CU      C     c   c 
 ucgg   C CGGC GC  CGGUGG ACcgu ucc g
 ||||   | |||| ||  |||||| ||||| ||| c
 agcc   G GCCG CG  GCCGCU UGGca agg u
g    caC C    C  -U      -     -   c 

Annotation confidence Not enough data

Genome context

chr28: 3620263-3620333 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-1621

Mature gga-miR-1621-5p

• Accession: MIMAT0007488
• Description: Gallus gallus gga-miR-1621-5p mature miRNA
• Sequence: 8 - ACCGGCUGCCUCGGUGGCAC - 27
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1621-3p

• Accession: MIMAT0007489
• Description: Gallus gallus gga-miR-1621-3p mature miRNA
• Sequence: 45 - GGUUCGCCGUGCCGCCGCGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964