Stem-loop gga-mir-1562

Accession

MI0007287

Description

Gallus gallus gga-mir-1562 precursor miRNA

Literature search

1 open access papers mention gga-mir-1562
(7 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments

aucaacaagcggggugcagcuGCACUGUAGAUGGAGGGGCUGCaugaagguggauaguuucUGUGCCCCGUGUAUGCAGUGCAggugcucacugcacuuggu
.....((((.(.((((((.((((((((((....(.(((((.(((.((((........)))))))))))).)...)))))))))).)))..))).).))))..

Structure

aucaa    c g   --   g          GAUG A     U   u    gug 
     caag g ggu  gca cuGCACUGUA    G GGGGC GCa gaag   g
     |||| | |||  ||| ||||||||||    | ||||| ||| ||||    
     guuc c uca  cgu gACGUGACGU    U CCCCG UGU cuuu   a
---ug    a g   cu   g          -AUG G     -   -    gau 

Annotation confidence Not enough data

Genome context

chr8: 24243083-24243184 [+]

Mature gga-miR-1562-5p

• Accession: MIMAT0007420
• Description: Gallus gallus gga-miR-1562-5p mature miRNA
• Sequence: 22 - GCACUGUAGAUGGAGGGGCUGC - 43
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1562-3p

• Accession: MIMAT0007421
• Description: Gallus gallus gga-miR-1562-3p mature miRNA
• Sequence: 62 - UGUGCCCCGUGUAUGCAGUGCA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964