Dead hairpin entry

Stem-loop gma-MIR1536

Accession

MI0007234

Description

Glycine max gma-MIR1536 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

2 open access papers mention gma-MIR1536
(3 sentences)

Sequence

165773 reads, 511.0 reads per million, 178 experiments

gagaggauagcaauauugucucugcuuuaauuuaucaccacauuccuucucaucucaagagaugcuuugcuuauugugccauauucccaagagauuuacauauguUUGUAAGAGAGCUUUUAAUUUUguugugaauggcugaaaauuuuauacaaugcccucaugagaguauuuagaugauauauuauguggguauguuguuaaacaaucAAGCAGAGACAAAUGUGUUUAgucaugcaug
((..(((((.((...((((((((((((((((.(((..((((((......((((((....(((((((((((..((((((((((..((.(((.(((.(((.....((((......))))...))).))).))).)))))))............))))))).......)))))))))))))))......))))))..)))..)))).......)))))))))))).)))))))..)).......

Structure

-------  ga     g  aua            -------    -u   ca      uccuuc      caag         -------  uu     ------------     au  c   g   u   cauau    GU 
       ga  ggaua ca   uugucucugcuu       uaau  uau  ccacau      ucaucu    agaugcuuu       gc  auugu            gccau  uc caa aga uua     guUU  A
       ||  ||||| ||   ||||||||||||       ||||  |||  ||||||      ||||||    |||||||||       ||  |||||            |||||  || ||| ||| |||     ||||   
       cu  UUUGU GU   AACAGAGACGAA       auug  gua  ggugua      aguaga    uuuaugaga       cg  uaaca            cggua  ag guu UUU AAU     CGAG  A
guacgua  gA     -  --A            cuaacaa    uu   ug      uuauau      ----         guacucc  --     uauuuuaaaagu     --  u   g   U   --UUU    AG