Stem-loop gma-MIR1520d

Accession

MI0007233

Description

Glycine max gma-MIR1520d precursor miRNA

Literature search

10 open access papers mention gma-MIR1520d
(18 sentences)

Sequence

73624 reads, 155.0 reads per million, 178 experiments

augaugacuaucaCAUGUCAUGUUCUGAUUGgauguuaacucuaugaaaaaacaaauacauuguuguuuucauugaucAAUCAGAACAUGACACGUGACAauuaucaucca
(((((((...((((.(((((((((((((((((........((.((((((((((((.....))))).))))))).))))))))))))))))))).))))...)))))))...

Structure

---       cua    A                 auguuaac  u       -     a 
   augauga   ucaC UGUCAUGUUCUGAUUGg        uc augaaaa aacaa u
   |||||||   |||| |||||||||||||||||        || ||||||| ||||| a
   uacuauu   AGUG ACAGUACAAGACUAAcu        ag uacuuuu uuguu c
acc       aAC    C                 --------  u       g     a 

Annotation confidence Medium

Genome context

chr7: 124349-124459 [-]

Mature gma-miR1520d-5p

• Accession: MIMAT0054032
• Description: Glycine max gma-miR1520d-5p mature miRNA
• Sequence: 14 - CAUGUCAUGUUCUGAUUG - 31
• Evidence: experimental ; unknown

Mature gma-miR1520d-3p

• Accession: MIMAT0007379
• Description: Glycine max gma-miR1520d-3p mature miRNA
• Sequence: 79 - AAUCAGAACAUGACACGUGACA - 100
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160