Stem-loop gma-MIR171a

Accession

MI0007213

Description

Glycine max gma-MIR171a precursor miRNA

Literature search

17 open access papers mention gma-MIR171a
(39 sentences)

Sequence

163600 reads, 1009.0 reads per million, 178 experiments

guucaacgGGAUAUUGGUCCGGUUCAAUAagaaagcaaugcucaaaauguuuuuggguccuguuuuuucaUUGAGCCGUGCCAAUAUCACgaaccacugcuc
((((.....(((((((((.(((((((((.((((((((..((((((((...))))))))..)))))))).))))))))).)))))))))..))))........

Structure

--------    aacgG         C         A        au        u 
        guuc     GAUAUUGGU CGGUUCAAU agaaagca  gcucaaaa  
        ||||     ||||||||| ||||||||| ||||||||  |||||||| g
        caag     CUAUAACCG GCCGAGUUa uuuuuugu  uggguuuu  
cucgucac    ---CA         U         c        cc        u 

Annotation confidence High

Genome context

chr12: 8478656-8478757 [+]

Mature gma-miR171a-5p

• Accession: MIMAT0054022
• Description: Glycine max gma-miR171a-5p mature miRNA
• Sequence: 9 - GGAUAUUGGUCCGGUUCAAUA - 29
• Evidence: experimental ; unknown

Mature gma-miR171a-3p

• Accession: MIMAT0007358
• Description: Glycine max gma-miR171a-3p mature miRNA
• Sequence: 71 - UUGAGCCGUGCCAAUAUCAC - 90
• Evidence: experimental ; 454 [1-2], SOLiD [3]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


3. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972