Stem-loop gma-MIR169c

Accession

MI0007212

Description

Glycine max gma-MIR169c precursor miRNA

Literature search

23 open access papers mention gma-MIR169c
(119 sentences)

Sequence

52737 reads, 371.0 reads per million, 172 experiments

aagugggaugAAGCCAAGGAUGACUUGCCGACauuaauuugccauuaagcuaacgaguuagguagaaucauuuguuagauuuucccGGCAGGUCAUCCUCUGGCUAUAuuuggcu
.(((.(((((.(((((((((((((((((((....(((((((............)))))))((.((((((........)))))))))))))))))))))).))))).))))).)))

Structure

a   g     A     -              ACauuaauuugccauuaagcuaacgaguua  u      auu 
 agu ggaug AGCCA AGGAUGACUUGCCG                              gg agaauc   u
 ||| ||||| ||||| ||||||||||||||                              || ||||||    
 ucg uuuAU UCGGU UCCUACUGGACGGc                              cc uuuuag   g
-   g     A     C              ------------------------------  -      auu 

Annotation confidence High

Genome context

chr9: 5343659-5343773 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR169c

Mature gma-miR169c-5p

• Accession: MIMAT0007357
• Description: Glycine max gma-miR169c-5p mature miRNA
• Sequence: 11 - AAGCCAAGGAUGACUUGCCGAC - 32
• Evidence: experimental ; 454 [1], SOLiD [2]

Mature gma-miR169c-3p

• Accession: MIMAT0054021
• Description: Glycine max gma-miR169c-3p mature miRNA
• Sequence: 87 - GGCAGGUCAUCCUCUGGCUAUA - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972