Stem-loop gma-MIR164a

Accession

MI0007209

Description

Glycine max gma-MIR164a precursor miRNA

Literature search

19 open access papers mention gma-MIR164a
(44 sentences)

Sequence

227163 reads, 826.0 reads per million, 173 experiments

agcuccuuguUGGAGAAGCAGGGCACGUGCAagucucuuggaucucaaaugccacugaacccuuugCACGUGCUCCCCUUCUCCAACacggguuu
.((.((.(((((((((((..(((((((((((((..((.(((..........)))..))....)))))))))))))..))))))))))).))))..

Structure

-a  u  u           CA             --uc  -u   aucu 
  gc cc uguUGGAGAAG  GGGCACGUGCAag    uc  ugg    c
  || || |||||||||||  |||||||||||||    ||  |||     
  ug gg aCAACCUCUUC  CUCGUGCACguuu    ag  acc    a
uu  -  c           CC             ccca  uc   guaa 

Annotation confidence High

Genome context

chr19: 49681250-49681344 [+]

Mature gma-miR164a-5p

• Accession: MIMAT0007354
• Description: Glycine max gma-miR164a-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; 454 [1], Northern [1]

Mature gma-miR164a-3p

• Accession: MIMAT0054018
• Description: Glycine max gma-miR164a-3p mature miRNA
• Sequence: 67 - CACGUGCUCCCCUUCUCCAAC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160