Stem-loop csa-mir-216b

Accession

MI0007202

Description

Ciona savignyi csa-mir-216b precursor miRNA

Literature search

1 open access papers mention csa-mir-216b
(1 sentences)

Sequence

gugacgcuugucgucUAAUCUCUGCAGGCAACUGUGAugucauagucacauaugugugcagagguuggaugaaauguaguc
..(((((...((((((((((((((((.(((..((((((......))))))..))).))))))))))))))))...)).)))

Structure

gu   -  uug                G   AC      gu 
  gac gc   ucgucUAAUCUCUGCA GCA  UGUGAu  c
  ||| ||   |||||||||||||||| |||  ||||||   
  cug ug   aguagguuggagacgu ugu  acacug  a
--   a  uaa                g   au      au 

Annotation confidence Not enough data

Genome context

reftig_16: 3924783-3924863 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csa-mir-216b

Mature csa-miR-216b

• Accession: MIMAT0006135
• Description: Ciona savignyi csa-miR-216b mature miRNA
• Sequence: 16 - UAAUCUCUGCAGGCAACUGUGA - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080