Stem-loop csa-mir-141

Accession

MI0007196

Description

Ciona savignyi csa-mir-141 precursor miRNA

Literature search

1 open access papers mention csa-mir-141
(1 sentences)

Sequence

uuggucgucggucgcaucuucaucacgcgguguucuagaacucauucUAACACUGUCUGGUAAAGAUGCgaucggcggcuacuu
.(((((((((((((((((((.((((.(((((((..(((((....)))))))))))).)))).)))))))))))))))))))...

Structure

--u                   c    c       uc     c 
   uggucgucggucgcaucuu auca gcggugu  uagaa u
   ||||||||||||||||||| |||| |||||||  |||||  
   aucggcggcuagCGUAGAA UGGU UGUCACA  AUcuu c
uuc                   A    C       --     a 

Annotation confidence Not enough data

Genome context

reftig_613: 31866-31949 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csa-mir-141

Mature csa-miR-141

• Accession: MIMAT0006129
• Description: Ciona savignyi csa-miR-141 mature miRNA
• Sequence: 48 - UAACACUGUCUGGUAAAGAUGC - 69
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080