Stem-loop csa-mir-7

Accession

MI0007186

Description

Ciona savignyi csa-mir-7 precursor miRNA

Literature search

1 open access papers mention csa-mir-7
(4 sentences)

Sequence

ccguccucuaccacgUGGAAGACUAGUGAUUUUGUUGUuucaucaacaacaaucuuuagucuacugcacgguugauggaugcuaucaucauuucuuauuuuug
.(((((((.(((..((((.(((((((.((((((((((......)))))).)))).))))))).))))..))).)).)))))......................

Structure

---------------------c     -  u   ac    A       U    -      Uu 
                      cgucc uc acc  gUGG AGACUAG GAUU UUGUUG  u
                      ||||| || |||  |||| ||||||| |||| ||||||   
                      guagg ag ugg  cguc ucugauu cuaa aacaac  c
guuuuuauucuuuacuacuauc     u  u   ca    a       u    c      ua 

Annotation confidence Not enough data

Genome context

reftig_30: 3091327-3091429 [+]

Mature csa-miR-7

• Accession: MIMAT0006120
• Description: Ciona savignyi csa-miR-7 mature miRNA
• Sequence: 16 - UGGAAGACUAGUGAUUUUGUUGU - 38
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080