Stem-loop csa-let-7c-2

Accession

MI0007184

Description

Ciona savignyi csa-let-7c-2 precursor miRNA

Literature search

2 open access papers mention csa-let-7c-2
(14 sentences)

Sequence

cucuugcugauaacaUGAGGUAGUAGGUUAUGCAGUUuggcgacaauauuucguugcaaaggagauaacuguguaacuugcuggcucuuuuaucgacaacuc
...(((.((((((...(((.(((((((((((((((((..(((((........))))).........))))))))))))))))).)))..)))))).)))...

Structure

cuc   c      caU   G                 -------ug     aau 
   uug ugauaa   GAG UAGUAGGUUAUGCAGUU         gcgac   a
   ||| ||||||   ||| |||||||||||||||||         |||||    
   aac gcuauu   cuc gucguucaaugugucaa         cguug   u
cuc   a      -uu   g                 uagaggaaa     cuu 

Annotation confidence Not enough data

Genome context

reftig_41: 1117496-1117597 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from csa-let-7c-2

Mature csa-let-7c

• Accession: MIMAT0006118
• Description: Ciona savignyi csa-let-7c mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUAUGCAGUU - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080