Stem-loop csa-let-7c-1

Accession

MI0007183

Description

Ciona savignyi csa-let-7c-1 precursor miRNA

Literature search

2 open access papers mention csa-let-7c-1
(14 sentences)

Sequence

gggcuucucccacaaUGAGGUAGUAGGUUAUGCAGUUuuugccuugaauguuuuuagaggcacaggagcuacuguguaaccuucugccuuuguggcagaug
.....(((.(((((..(((((((.((((((((((((((((((((((((....)))).)))))...)))..)))))))))))).)))))))))))).)))..

Structure

gggcu   c     aU       U            --   ---     -    u 
     ucu ccaca  GAGGUAG AGGUUAUGCAGU  Uuu   ugccu ugaa g
     ||| |||||  ||||||| ||||||||||||  |||   ||||| ||||  
     aga ggugu  uuccguc uccaauguguca  gag   acgga auuu u
---gu   c     --       u            uc   gac     g    u 

Annotation confidence Not enough data

Genome context

reftig_41: 1114139-1114239 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from csa-let-7c-1

Mature csa-let-7c

• Accession: MIMAT0006118
• Description: Ciona savignyi csa-let-7c mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUAUGCAGUU - 37
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080