Stem-loop cin-mir-219

Accession

MI0007178

Description

Ciona intestinalis cin-mir-219 precursor miRNA

Sequence

3116 reads, 1332 reads per million, 2 experiments

auggcgucuguuucgUGAUUGUCCAAACGCAAGCUCAGuuuuaaaauacuGCGAUUGUGUCUGGACAUCUcaaaucagaaggcugcugucuucaaaaaccaa
(((((((((......(((.((((((.((((((.(.((((........)))).).)))))).))))))..))).......)))).))))).............

Structure

-------------     -    -guuucg   -U      A      G U    uuu 
             auggc gucu       UGA  UGUCCA ACGCAA C CAGu   a
             ||||| ||||       |||  |||||| |||||| | ||||    
             ugucg cgga       acU  ACAGGU UGUGUU G Guca   a
aaccaaaaacuuc     u    agacuaa   CU      C      A C    uaa 

Annotation confidence High

Genome context

7q: 5634284-5634385 [+]

Mature cin-miR-219-5p

• Accession: MIMAT0006113
• Description: Ciona intestinalis cin-miR-219-5p mature miRNA
• Sequence: 16 - UGAUUGUCCAAACGCAAGCUCAG - 38
• Evidence: experimental ; Illumina [2]

Mature cin-miR-219-3p

• Accession: MIMAT0015264
• Description: Ciona intestinalis cin-miR-219-3p mature miRNA
• Sequence: 51 - GCGAUUGUGUCUGGACAUCU - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39