Stem-loop cin-mir-184

Accession

MI0007173

Description

Ciona intestinalis cin-mir-184 precursor miRNA

Sequence

84 reads, 36 reads per million, 2 experiments

gcguaauagaacuugccacuucuucgcuuuccaucauuuugggguuaaaucacccaagccauugaUGGACGGAGAACUGAUAAGGGCucuugcguuggucaa
((((((.((..((((.((.(((((((...(((((((.((((((.........))))))....)))))))))))))).)).))))..)).)))))).......

Structure

-------      u  aa    c  c       cuu       ---u      guu 
       gcguaa ag  cuug ca uucuucg   uccauca    uuuggg   a
       |||||| ||  |||| || |||||||   |||||||    ||||||   a
       ugcguu uC  GAAU GU AAGAGGC   AGGUagu    gaaccc   a
aacuggu      c  GG    A  C       ---       uacc      acu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cin-miR-184

• Accession: MIMAT0006108
• Description: Ciona intestinalis cin-miR-184 mature miRNA
• Sequence: 66 - UGGACGGAGAACUGAUAAGGGC - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39