Stem-loop cin-mir-133

Accession

MI0007167

Description

Ciona intestinalis cin-mir-133 precursor miRNA

Sequence

4647 reads, 1878 reads per million, 2 experiments

agaaaacauugcgggugucggucGUUGGUAAAGUGGAAUCAAAccuuacgguuuuaguccaugguUUGGUCCCCUUCAACCAGCUGcugcuaccacgcaca
.........((((((((.((((.((((((.(((.((.((((((((....((.......))..)))))))).)))))..)))))).)))).)))).))))..

Structure

agaaaacau    -    u    c      -A   U  A        uuac  uu 
         ugcg ggug cggu GUUGGU  AAG GG AUCAAAcc    gg  u
         |||| |||| |||| ||||||  ||| || ||||||||    ||  u
         acgc ccau gucG CGACCA  UUC CC UGGUUugg    cc  a
-------ac    a    c    U      AC   -  C        --ua  ug 

Annotation confidence High

Genome context

1q: 5268510-5268610 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-133

Mature cin-miR-133-5p

• Accession: MIMAT0015259
• Description: Ciona intestinalis cin-miR-133-5p mature miRNA
• Sequence: 24 - GUUGGUAAAGUGGAAUCAAA - 43
• Evidence: experimental ; Illumina [2]

Mature cin-miR-133-3p

• Accession: MIMAT0006102
• Description: Ciona intestinalis cin-miR-133-3p mature miRNA
• Sequence: 66 - UUGGUCCCCUUCAACCAGCUG - 86
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39