Stem-loop cin-mir-124-2

Accession

MI0007165

Description

Ciona intestinalis cin-mir-124-2 precursor miRNA

Literature search

3 open access papers mention cin-mir-124-2
(44 sentences)

Sequence

72651 reads, 31145 reads per million, 2 experiments

cguaauauuuaaagggcgcuuaugaguCGUGUUUACUGUGGACCUUGcugugugacgucacaaUAAGGCACGCGGUGAAUGCCAAucaaaagucgccgc
..............(((((((.(((...((((((((((((..(((((.((((......)))).)))))..))))))))))))...))).))).))))..

Structure

cguaauauuuaaag    -   a   guC            GA     c    ug 
              ggcg cuu uga   GUGUUUACUGUG  CCUUG ugug  a
              |||| ||| |||   ||||||||||||  ||||| ||||   
              ccgc gaa acu   CGUAAGUGGCGC  GGAAU acac  c
------------cg    u   a   AAC            AC     a    ug 

Annotation confidence High

Genome context

7q: 6301598-6301696 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-124-2

Mature cin-miR-124-3p

• Accession: MIMAT0006100
• Description: Ciona intestinalis cin-miR-124-3p mature miRNA
• Sequence: 64 - UAAGGCACGCGGUGAAUGCCAA - 85
• Evidence: experimental ; Illumina [2]

Mature cin-miR-124-2-5p

• Accession: MIMAT0015257
• Description: Ciona intestinalis cin-miR-124-2-5p mature miRNA
• Sequence: 28 - CGUGUUUACUGUGGACCUUG - 47
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39