Stem-loop cin-mir-92c

Accession

MI0007162

Description

Ciona intestinalis cin-mir-92c precursor miRNA

Literature search

1 open access papers mention cin-mir-92c
(1 sentences)

Sequence

1991 reads, 771 reads per million, 2 experiments

ucccaaacuuauaaacuguaccugcauacuuAGGCCUGGCGAAGUGCAUUGcguugucauggucgUAUUGCACUCGUCCCGGUCUAUguaucugguaaaaa
..................((((.(.((((.((((((.(((((.(((((.((((..........)))).)))))))).)).)))))).))))).))))....

Structure

ucccaaacuuauaaacug    u c    u      U  -   A     U    uugu 
                  uacc g auac uAGGCC GG CGA GUGCA UGcg    c
                  |||| | |||| |||||| || ||| ||||| ||||     
                  augg c uaug AUCUGG CC GCU CACGU AUgc    a
--------------aaaa    u -    U      C  U   -     U    uggu 

Annotation confidence High

Genome context

3p: 1865219-1865319 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-92c

Mature cin-miR-92c-5p

• Accession: MIMAT0015255
• Description: Ciona intestinalis cin-miR-92c-5p mature miRNA
• Sequence: 32 - AGGCCUGGCGAAGUGCAUUG - 51
• Evidence: experimental ; Illumina [2]

Mature cin-miR-92c-3p

• Accession: MIMAT0006098
• Description: Ciona intestinalis cin-miR-92c-3p mature miRNA
• Sequence: 66 - UAUUGCACUCGUCCCGGUCUAU - 87
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39