Stem-loop cin-mir-78

Accession

MI0007159

Description

Ciona intestinalis cin-mir-78 precursor miRNA

Sequence

auuagauguugagaggacacuuaucgggcaucaguuugugaugaacagcgucauggaugaaacUGGAGGCCUGGGUGUUUCCUGuauaguugauaaugg
(((((.(((..((.(((((((...(((((.(((((((((((((.....)))))).....)))))))..)))))))))))).))..))).))))).....

Structure

-----     a   ug  a       uau     -a       -----      a 
     auuag ugu  ag ggacacu   cgggc  ucaguuu     gugaug a
     ||||| |||  || |||||||   |||||  |||||||     |||||| c
     uaguu aua  UC UUUGUGG   GUCCG  GGUcaaa     uacugc a
gguaa     g   uG  C       ---     GA       guagg      g 

Annotation confidence Not enough data

Genome context

2q: 8003792-8003890 [+]

Mature cin-miR-78

• Accession: MIMAT0006095
• Description: Ciona intestinalis cin-miR-78 mature miRNA
• Sequence: 64 - UGGAGGCCUGGGUGUUUCCUG - 84
• Evidence: not_experimental

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080